Domeo Resources

Screencasts

A brief introduction to Domeo by Tim Clark and Paolo Ciccarese:



Jun 2011
NCBO Webinar: Linking science and semantics with the Annotation Ontology and the SWAN Annotation Tool (Domeo) by Paolo Ciccarese.

Mar 2011
NIF Webinar: The Swan Annotation Tool (Domeo) and Annotation Ontology by Paolo Ciccarese.

More
Introductions to the new features deployed with some of the latest Domeo builds:
Build 9, Build 8, Build 7.

Reference Paper

Ciccarese P, Ocana M, Clark, T. DOMEO: a web-based tool for semantic annotation of online documents. Paper at Bio-Ontologies 2011, Vienna, Austria.

Related Publications

Ciccarese P, Ocana M, Castro LJG, Das S, Clark, T. An Open Annotation Ontology for Science on Web 3.0. J Biomed Semantics 2011, 2(Suppl 2):S4 (17 May 2011)

Clark T, Ciccarese P, Attwood T, de Waard A and Pettifer S A Round-Trip to the Annotation Store: Open, Transferable Semantic Annotation of Biomedical Publications. Paper at Workshop 'Beyond the PDF' (January 19-21, 2011 University of California San Diego)

Ciccarese P, Ocana M, Das S, Clark T. AO: An Open Annotation Ontology for Science on the Web. Paper at Bio-ontologies 2010

UIMA integration through Clerezza

UIMA is an OASIS standard that allows the definition of analysis pipelines to manage unstructured information and extract structures and semantics around given data. The Clerezza-UIMA integration brings the power of UIMA inside Clerezza allowing reuse of existing UIMA components in a Linked Open Data compliant manner.Clerezza can transform the extraction results in Annotation Ontology (AO) format so that they can be imported by Domeo.

Funding

Domeo has been made possible by generous support from:

Testimonials

Dr. Maryann Martone Co-principal investigator of the Neuroscience Information Framework

"We are pleased to announce that annotation of literature using Domeo will be made available through Neuroscience Information Framework in our next release. We believe that Domeo is a great way for the community to help make NIF better by annotating content in a way that makes it easier to find. We will be launching a project to annotate antibodies used within the neuroscience literature using Domeo".

Become a User

If you are interested in collaborating with us as a tester, or you simply want to have access to the latest version of Domeo, please contact us.

Domeo If you already have an account, you can access the Domeo Public Instance here.

Become a Developer

Domeo Code by Paolo Ciccarese

We are looking for knowledgeable and energetic collaborators with great ideas.
To become a developer of the open source Domeo Web Annotation Toolkit, please contact us.

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